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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26218130_26218258_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26218130 - 26218258
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTAC
5'SS Class:
strong_major
3'SS Sequence:
ACACTCCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
GTTTCAAACACT
Flanking Amino Acid:
YKLLDKKTCGDIDECENPDA
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
80.3
28.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
74.2
0.55
0.9
70
35.6
Minor 5ss
40.6
-1.1
2.8
52.6
44.6
Minor BPS
43.5
-0.4
2.5
71
45.3

Associated Gene:

Gene:
LRP8
Ensembl Gene ID:
ENSAPLG00000010336
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030080
26205427 - 26372372
166946
ENSAPLT00000010806
26205427 - 26372372
166946