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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26228659_26244589_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26228659 - 26244589
Intron Length:
15931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
TGCAGCTCACCT
Flanking Amino Acid:
SGIDEAGCTPACSPNEFQCS
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.5
40.3
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
84.9
0.78
0.7
77.7
31
Minor 5ss
34.3
-1.8
2.8
37.3
42.5
Minor BPS
43.6
-0.4
2.2
61.54
47.7

Associated Gene:

Gene:
LRP8
Ensembl Gene ID:
ENSAPLG00000010336
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030080
26205427 - 26372372
166946
ENSAPLT00000010806
26205427 - 26372372
166946