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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26457108_26458623_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26457108 - 26458623
Intron Length:
1516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
CATTGTTTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATACTTTTATTT
Flanking Amino Acid:
PPGGPPFWDYAHPAFPPEYM
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
68.2
43
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
73.1
0.52
0.9
65.4
40.7
Minor 5ss
35.8
-1.6
3.5
51.7
45
Minor BPS
52.6
0.16
1.5
67.97
37.2

Associated Gene:

Gene:
DMRTB1
Ensembl Gene ID:
ENSAPLG00000006887
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007140
26456457 - 26463558
7102