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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26458857_26460153_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26458857 - 26460153
Intron Length:
1297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
TGTGTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
TCTAAATTAAGG
Flanking Amino Acid:
YGPGNAASVSIPDGGGDFHQ
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
66.8
44.5
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
82.9
0.74
0.9
77.3
37
Minor 5ss
37.3
-1.4
2.7
48.1
41.6
Minor BPS
45.7
-0.4
2.1
54.31
46.1

Associated Gene:

Gene:
DMRTB1
Ensembl Gene ID:
ENSAPLG00000006887
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007140
26456457 - 26463558
7102