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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26460299_26463451_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26460299 - 26463451
Intron Length:
3153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
VLAETTKEAHATATDSQDSG
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
75.2
40.6
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
94.5
1
0.6
88
29.4
Minor 5ss
36
-1.6
3.3
45.6
43.8
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
DMRTB1
Ensembl Gene ID:
ENSAPLG00000006887
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007140
26456457 - 26463558
7102