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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26501852_26508887_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26501852 - 26508887
Intron Length:
7036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCTT
5'SS Class:
strong_major
3'SS Sequence:
TATCTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TATGCAATATCT
Flanking Amino Acid:
QNQSVQQGSQGYQGSFHSIQ
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.1
81.8
38.5
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
83.7
0.76
0.9
80.8
36.5
Minor 5ss
45.7
-0.5
2.9
67.7
43.2
Minor BPS
46.6
-0.1
2.2
71.61
44.6

Associated Gene:

Gene:
GLIS1
Ensembl Gene ID:
ENSAPLG00000013972
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014560
26498480 - 26604636
106157