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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26509073_26523615_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26509073 - 26523615
Intron Length:
14543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTGTG
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTTCTGAATT
Flanking Amino Acid:
HQSPLESAREGLAPNIIPPL
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
68.8
42.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
90.5
0.91
0.6
84.8
30
Minor 5ss
41.9
-0.9
3.1
49
47.2
Minor BPS
78.4
0.97
1.2
92.49
29.5

Associated Gene:

Gene:
GLIS1
Ensembl Gene ID:
ENSAPLG00000013972
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014560
26498480 - 26604636
106157