Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26523767_26529556_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

26523767 - 26529556

Intron Length:

5790

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTCGATCTG

5'SS Class:

weak_major

3'SS Sequence:

TGTTTGTTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

CTTATTTTACAT

Flanking Amino Acid:

SSQHILDGKCGMYSGSSANH

Intron Amino Acid Position:

492

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

52.6

0.06

1.4

49.6

46.6

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

81.4

0.71

0.9

75.8

38.1

Minor 5ss

31.3

-2.1

3.2

37.7

42.2

Minor BPS

49.6

0.05

1.7

68.85

42.4

Associated Gene:

Gene:

GLIS1

Ensembl Gene ID:

ENSAPLG00000013972

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014560

26498480 - 26604636

106157