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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26529657_26532848_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26529657 - 26532848
Intron Length:
3192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
SAKEQQVHKKLNSCTDIEQD
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79
35.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
85.4
0.8
0.6
81.4
23.6
Minor 5ss
36.5
-1.5
3.2
50.8
45.8
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
GLIS1
Ensembl Gene ID:
ENSAPLG00000013972
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014560
26498480 - 26604636
106157