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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26536515_26595872_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26536515 - 26595872
Intron Length:
59358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ATGACTTTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATGACT
Flanking Amino Acid:
HSGEKPNKCMFEGCNKAFSR
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.5
41.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.2
0.61
0.9
73.7
41
Minor 5ss
38
-1.4
3
47.2
42.5
Minor BPS
67
0.62
1.5
87.41
31.4

Associated Gene:

Gene:
GLIS1
Ensembl Gene ID:
ENSAPLG00000013972
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044801
26498480 - 26604636
106157
ENSAPLT00000014560
26498480 - 26604636
106157