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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26596271_26596330_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
26596271 - 26596330
Intron Length:
60

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAGCATTC
5'SS Class:
weak_major
3'SS Sequence:
TTCTTAAAACAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AGTTTCTTAAAA
Flanking Amino Acid:
NGSLSLMMNGKPADDYSSAA
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.2
0.03
1.2
53.3
39.2
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
56
0.13
1.2
55.7
42
Minor 5ss
48.5
-0.1
3.2
68.9
37.2
Minor BPS
71.8
0.68
1.3
75.82
34.6

Associated Gene:

Gene:
GLIS1
Ensembl Gene ID:
ENSAPLG00000013972
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044801
26498480 - 26604636
106157
ENSAPLT00000014560
26498480 - 26604636
106157