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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_2660322_2664877_R

Intron Information:

Intron Rank:
134052
Intron Class:
major
Intron Phase:
Intron Coordinates:
2660322 - 2664877
Intron Length:
4556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTCA
5'SS Class:
major
3'SS Sequence:
TTGATGCCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCCTTCTCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
62.8
38.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
74.5
0.55
1
70.4
41.1
Minor 5ss
35.3
-1.7
3.5
47.9
47.7
Minor BPS
60.4
0.31
1.5
65.51
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019399
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035057
2659061 - 2665018
5958