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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26695422_26696405_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26695422 - 26696405
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAAACC
5'SS Class:
major
3'SS Sequence:
TTTTCTCAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTTCTCAATT
Flanking Amino Acid:
ILNTLLTLQEVVDRHFKLPH
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
0.9
71
32.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
74.7
0.55
0.9
76
32.9
Minor 5ss
28.6
-2.4
2.9
35.3
40.9
Minor BPS
76.7
0.92
1.4
91.82
31

Associated Gene:

Gene:
NDC1
Ensembl Gene ID:
ENSAPLG00000002028
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002171
26694107 - 26710559
16453