Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26699509_26700625_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

26699509 - 26700625

Intron Length:

1117

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTGTGA

5'SS Class:

major

3'SS Sequence:

GCTGCGGTGACAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTACAC

U12 Branch Point Sequence:

TTGTCAGGAGCT

Flanking Amino Acid:

GEMKVLPQTPEDMPFQSQRS

Intron Amino Acid Position:

370

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.9

0.49

1.1

61.2

39.9

Major BPS

72.8

0.57

30.3

Major PPT

55.8

0.13

1.1

48.6

43.9

Minor 5ss

42.3

-0.9

3.1

56.3

47.9

Minor BPS

43.5

-0.4

2.4

70.19

46.2

Associated Gene:

Gene:

NDC1

Ensembl Gene ID:

ENSAPLG00000002028

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002171

26694107 - 26710559

16453