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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26700782_26701681_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
26700782 - 26701681
Intron Length:
900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATA
5'SS Class:
strong_major
3'SS Sequence:
TGCATACTGCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTGTCTGCATA
Flanking Amino Acid:
RQEVFSLSQPGGHPHNWTAI
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
89
24.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
58.8
0.2
1
51.4
42.9
Minor 5ss
39.4
-1.2
2.8
51.5
45
Minor BPS
48.7
-0.1
2
67.18
40

Associated Gene:

Gene:
NDC1
Ensembl Gene ID:
ENSAPLG00000002028
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002171
26694107 - 26710559
16453