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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26701764_26703030_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26701764 - 26703030
Intron Length:
1267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTTGTGTGAACT
Flanking Amino Acid:
LNSNPPLIIKFLALQDLMLL
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
93
0.97
0.6
88.6
20.7
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
52.7
0.16
2.2
80.07
42.1

Associated Gene:

Gene:
NDC1
Ensembl Gene ID:
ENSAPLG00000002028
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002171
26694107 - 26710559
16453