Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26703124_26705175_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

26703124 - 26705175

Intron Length:

2052

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TGTTTATATTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

TTGCTCTGAATA

Flanking Amino Acid:

WLLFKIYATETHHFPVQPTF

Intron Amino Acid Position:

260

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

76.4

0.59

0.9

75.1

39.1

Minor 5ss

-1.4

2.8

51.9

44.6

Minor BPS

61.4

0.35

1.4

69.29

37.1

Associated Gene:

Gene:

NDC1

Ensembl Gene ID:

ENSAPLG00000002028

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002171

26694107 - 26710559

16453