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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26705309_26705986_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26705309 - 26705986
Intron Length:
678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTAAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
ATATTTGTATCT
Flanking Amino Acid:
ISTTMDLHIDSKLHPLDTLS
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
77.5
32.9
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
86.8
0.83
0.7
81.5
30.6
Minor 5ss
29.2
-2.4
2.9
35.3
41.5
Minor BPS
47.7
-0.1
2.2
70.23
41.2

Associated Gene:

Gene:
NDC1
Ensembl Gene ID:
ENSAPLG00000002028
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002171
26694107 - 26710559
16453