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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26706039_26707515_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26706039 - 26707515
Intron Length:
1477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GTTTTTGTAGTT
Flanking Amino Acid:
RNFCVAYYFFGYIPKVWIST
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
84.3
33.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
80.7
0.69
0.7
74.4
30.8
Minor 5ss
38.3
-1.3
3.4
54.5
43.9
Minor BPS
48
-0
2.1
71.54
40.4

Associated Gene:

Gene:
NDC1
Ensembl Gene ID:
ENSAPLG00000002028
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002171
26694107 - 26710559
16453