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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26709100_26709594_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26709100 - 26709594
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCGTG
5'SS Class:
major
3'SS Sequence:
TTCTCTATTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTGATTTAATA
Flanking Amino Acid:
FLAVPCTPSESPENAVPQMC
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
69
42.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.8
0.74
0.7
81.9
28.5
Minor 5ss
40
-1.1
3.4
55.5
48.6
Minor BPS
65.6
0.48
1.6
75.77
36

Associated Gene:

Gene:
NDC1
Ensembl Gene ID:
ENSAPLG00000002028
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002171
26694107 - 26710559
16453