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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26710286_26710492_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26710286 - 26710492
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTTAGTTGC
5'SS Class:
major
3'SS Sequence:
TTTCTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
YLAGSLIPVSNSFNDLYTSY
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.2
0.31
1.2
59.3
40.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.5
0.82
0.7
86
26.8
Minor 5ss
39.1
-1.2
2.7
51.2
39.2
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
NDC1
Ensembl Gene ID:
ENSAPLG00000002028
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002171
26694107 - 26710559
16453