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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26719015_26720232_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26719015 - 26720232
Intron Length:
1218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTAC
5'SS Class:
major
3'SS Sequence:
TCATTTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CCTTGCTAAACA
Flanking Amino Acid:
IIYIEEAHAADGWAFKNNII
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
63.5
37.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80.7
0.69
0.9
72.7
42.1
Minor 5ss
35.3
-1.7
3.5
49.3
47.2
Minor BPS
53
0.09
2.1
66.36
46.4

Associated Gene:

Gene:
DIO1
Ensembl Gene ID:
ENSAPLG00000026658
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020764
26716869 - 26720977
4109