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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26720433_26720911_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26720433 - 26720911
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACCC
5'SS Class:
major
3'SS Sequence:
ATTGCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TACTGTATAATT
Flanking Amino Acid:
LLQEGKVIYKGGVGPWNYHP
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
65.8
38.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.4
0.68
0.9
73.7
36.2
Minor 5ss
32.6
-2
3.1
43.3
43.8
Minor BPS
49.2
0.02
2
69.44
42.1

Associated Gene:

Gene:
DIO1
Ensembl Gene ID:
ENSAPLG00000026658
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020764
26716869 - 26720977
4109