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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26724367_26725020_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26724367 - 26725020
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATATTTTAAAT
Flanking Amino Acid:
ISKVAIQCYLVRTLRIERSI
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.4
43.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73
0.52
0.9
70.4
40
Minor 5ss
36.2
-1.6
3.5
48.3
47.3
Minor BPS
65.7
0.57
1.4
78.88
36.8

Associated Gene:

Gene:
HSPB11
Ensembl Gene ID:
ENSAPLG00000028953
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030774
26722333 - 26725418
3086