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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26725128_26725320_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26725128 - 26725320
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGCG
5'SS Class:
major
3'SS Sequence:
TTTTTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTTTTCTCCACA
Flanking Amino Acid:
PQHPAENMADGSSETFWTTT
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
57.4
41.8
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
88.6
0.87
0.6
84.4
23.7
Minor 5ss
23.7
-3
3.2
21.5
37.3
Minor BPS
61.2
0.35
2
79.1
37.4

Associated Gene:

Gene:
HSPB11
Ensembl Gene ID:
ENSAPLG00000028953
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030774
26722333 - 26725418
3086