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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26736363_26736531_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26736363 - 26736531
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCACT
5'SS Class:
major
3'SS Sequence:
TCTGCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCAGCAT
U12 Branch Point Sequence:
AAGAGCTCAGCA
Flanking Amino Acid:
DGEDEQEELCGDLPRSLPTY
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
0.9
73.2
37.4
Major BPS
50.7
0.02
1.5
62
44.2
Major PPT
80
0.68
0.8
73.3
31.6
Minor 5ss
36.7
-1.5
2.9
47
42.5
Minor BPS
41.3
-0.6
2
48.32
41.6

Associated Gene:

Gene:
LDLRAD1
Ensembl Gene ID:
ENSAPLG00000002571
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002579
26735242 - 26737228
1987