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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26745602_26745872_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26745602 - 26745872
Intron Length:
271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTTGTC
5'SS Class:
major
3'SS Sequence:
TATTTTGTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
GATCTCCTAACC
Flanking Amino Acid:
ADDGKIVIFQSKPEVQYVPQ
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1
68.7
36.4
Major BPS
72
0.55
1
71.8
31.4
Major PPT
82.6
0.73
0.8
81.5
35.9
Minor 5ss
30.8
-2.2
3.4
43.6
44.1
Minor BPS
56.9
0.2
1.7
66.8
37.8

Associated Gene:

Gene:
TMEM59
Ensembl Gene ID:
ENSAPLG00000022891
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030584
26743331 - 26750750
7420