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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26746026_26746222_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26746026 - 26746222
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
AATATATTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATATAAAAACA
Flanking Amino Acid:
LPFAELRQEQLMSLMPRIHL
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
100
1.24
0.5
100
0
Major PPT
74.5
0.55
1
67
43.1
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
40.7
-0.7
2
51.03
40

Associated Gene:

Gene:
TMEM59
Ensembl Gene ID:
ENSAPLG00000022891
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030584
26743331 - 26750750
7420