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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26746318_26748320_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26746318 - 26748320
Intron Length:
2003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATCTTCTCATTT
Flanking Amino Acid:
LNRTKLECDSACTEAYSQSD
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
84.6
33.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
93.6
0.98
0.6
89.1
19.8
Minor 5ss
38
-1.4
3.4
57.1
47.2
Minor BPS
51
0.11
1.8
69.81
41.8

Associated Gene:

Gene:
TMEM59
Ensembl Gene ID:
ENSAPLG00000022891
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030584
26743331 - 26750750
7420