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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26751062_26751420_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26751062 - 26751420
Intron Length:
359

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCAGGTCCC
5'SS Class:
major
3'SS Sequence:
TTCTCGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
GCCTTCCTAATT
Flanking Amino Acid:
LRQAPIEALRRVVVVEDIKR
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.2
71.2
36.8
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
86.3
0.82
0.8
84.1
30.9
Minor 5ss
23.3
-3.1
3.8
27.8
36.1
Minor BPS
55.5
0.25
1.7
68.49
42.9

Associated Gene:

Gene:
TCEANC2
Ensembl Gene ID:
ENSAPLG00000002806
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002833
26750939 - 26754851
3913