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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26752824_26754662_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26752824 - 26754662
Intron Length:
1839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCGTTA
5'SS Class:
major
3'SS Sequence:
TTGCTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATTTTATACTT
Flanking Amino Acid:
KLLCEALDLEIDHPLAENIE
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.44
1.2
66.6
41.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83
0.74
0.9
80.5
37
Minor 5ss
44.5
-0.6
3.5
63.9
47.7
Minor BPS
48.2
-0
1.8
67.6
37.7

Associated Gene:

Gene:
TCEANC2
Ensembl Gene ID:
ENSAPLG00000002806
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002833
26750939 - 26754851
3913