About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26765217_26765290_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26765217 - 26765290
Intron Length:
74

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCAGGG
5'SS Class:
major
3'SS Sequence:
TTCTGTGTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTCCCTCTGACT
Flanking Amino Acid:
KRGFAAAYRKDACGRQLTGL
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.3
51.7
45.7
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
78.2
0.63
0.9
76.1
37.8
Minor 5ss
34
-1.8
3.6
47.1
48.3
Minor BPS
51.2
0.12
1.7
69.1
42.1

Associated Gene:

Gene:
CDCP2
Ensembl Gene ID:
ENSAPLG00000030212
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030206
26764000 - 26767442
3443