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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26765590_26766118_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
26765590 - 26766118
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTATACCTA
5'SS Class:
weak_major
3'SS Sequence:
GCAACTTCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGGCAC
U12 Branch Point Sequence:
CCTCCGGCAACT
Flanking Amino Acid:
IPNFPGPYPY
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60
0.24
1.1
56.9
41.8
Major BPS
45
-0.3
1.5
51
44.3
Major PPT
68.4
0.41
1
58
42.8
Minor 5ss
49.3
-0
2.9
68.5
42.8
Minor BPS
40.4
-0.6
2.6
61.08
48.3

Associated Gene:

Gene:
CDCP2
Ensembl Gene ID:
ENSAPLG00000030212
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031280
26764000 - 26766120
2121