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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26765639_26767366_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26765639 - 26767366
Intron Length:
1728

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCACAGAGC
5'SS Class:
major
3'SS Sequence:
TCCTGCCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCACAT
U12 Branch Point Sequence:
TCACATCTACCT
Flanking Amino Acid:
HKYMQALNDPGIKCGGVLSA
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.9
0.31
1.2
60.9
40.2
Major BPS
59.9
0.25
1.2
69
38.9
Major PPT
66.8
0.38
0.9
58
37.6
Minor 5ss
20.7
-3.4
4
30.8
37.7
Minor BPS
42.8
-0.4
2
59.85
43.3

Associated Gene:

Gene:
CDCP2
Ensembl Gene ID:
ENSAPLG00000030212
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030206
26764000 - 26767442
3443