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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26771158_26772793_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26771158 - 26772793
Intron Length:
1636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTGCAA
U12 Branch Point Sequence:
CACACTGCAAAG
Flanking Amino Acid:
NIRIFYVLSQETSLEKLPWS
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
47.8
-0.1
1.3
57.3
39.4
Major PPT
87.4
0.84
0.7
84.9
29.9
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
36.6
-1.1
2.1
34.3
40

Associated Gene:

Gene:
CYB5RL
Ensembl Gene ID:
ENSAPLG00000003214
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003264
26770954 - 26783753
12800