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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26774946_26778044_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26774946 - 26778044
Intron Length:
3099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTATTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TGTTTTTTATTA
Flanking Amino Acid:
AEGYFEVLVKCYEAGLMSQY
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
81.1
0.7
0.9
82.3
34.1
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
62
0.37
1.5
71.06
35.7

Associated Gene:

Gene:
CYB5RL
Ensembl Gene ID:
ENSAPLG00000003214
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044374
26773326 - 26780604
7279
ENSAPLT00000003264
26770954 - 26783753
12800