About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26785284_26785614_F


Intron Information:

Intron Rank:
6

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
26785284 - 26785614

Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ACG|GTAAGCAAA

5'SS Class:
strong_major

3'SS Sequence:
CTTCCCTCTGCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TGCAAAC

U12 Branch Point Sequence:
TTTGCTGCAAAC

Flanking Amino Acid:
VPEVKKRVVTKPAGIYGVQP

Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
81.8
0.75
1
74.5
37.6

Major BPS
52.2
0.06
1.1
59
36

Major PPT
82.8
0.74
0.7
77
25

Minor 5ss
39.2
-1.2
2.9
49.4
46.6

Minor BPS
45.1
-0.3
2.3
63.41
42.4

Associated Gene:

Gene:
MRPL37

Ensembl Gene ID:

Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

26781877 - 26785692
3816