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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26792299_26792909_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26792299 - 26792909
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CACTGTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATTAATCACCC
Flanking Amino Acid:
PGTPIMPSPADSTNSSDNIY
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
70.9
0.47
0.9
64.1
36.5
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
43.3
-0.5
2.1
57.06
40.6

Associated Gene:

Gene:
SSBP3
Ensembl Gene ID:
ENSAPLG00000003426
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043354
26790475 - 26800954
10480