Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26792991_26793458_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

26792991 - 26793458

Intron Length:

468

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGA|GTATGCCCC

5'SS Class:

weak_major

3'SS Sequence:

GGTGCCGGCACAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTGGGAC

U12 Branch Point Sequence:

GGTGCCGGCACA

Flanking Amino Acid:

WPNPSSANSVTHPSSISPQG

Intron Amino Acid Position:

157

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

59.1

0.22

1.1

41.8

Major BPS

41.6

-0.5

1.5

34.5

43.7

Major PPT

53.8

0.09

1.1

45.4

41.4

Minor 5ss

46.5

-0.4

2.7

41.4

Minor BPS

40.4

-0.7

2.4

53.59

44.4

Associated Gene:

Gene:

SSBP3

Ensembl Gene ID:

ENSAPLG00000003426

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043354

26790475 - 26800954

10480