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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26800746_26800787_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
26800746 - 26800787
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGCCCA
5'SS Class:
major
3'SS Sequence:
CCTCAGGGCACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCAAAAT
U12 Branch Point Sequence:
AGGCCCAAAATG
Flanking Amino Acid:
PPPPHSPGPAWPHALGQRQD
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
55.2
43.8
Major BPS
48.3
-0.1
1.2
53.2
37.3
Major PPT
55.8
0.13
1
48
39
Minor 5ss
36.9
-1.5
3.3
45
45
Minor BPS
43.5
-0.6
1.9
45.03
41.1

Associated Gene:

Gene:
SSBP3
Ensembl Gene ID:
ENSAPLG00000003426
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043354
26790475 - 26800954
10480