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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26813208_26813928_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26813208 - 26813928
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGCAC
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
GGCTGCTGACGC
Flanking Amino Acid:
KWIDTAACLSAERHAGCPCV
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
63.9
42.4
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
92.7
0.96
0.6
85.4
29.3
Minor 5ss
30.6
-2.2
3.3
33.6
41.9
Minor BPS
38.6
-0.8
2.2
44.25
43.5

Associated Gene:

Gene:
ACOT11
Ensembl Gene ID:
ENSAPLG00000003835
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031282
26810225 - 26818329
8105
ENSAPLT00000003923
26808142 - 26818329
10188
ENSAPLT00000041256
26808142 - 26819098
10957
ENSAPLT00000037368
26808142 - 26819098
10957