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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26815594_26815702_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
26815594 - 26815702
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
CACCCGTGCCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATCCAT
U12 Branch Point Sequence:
CCATCCATCACC
Flanking Amino Acid:
FVAQGPPGTKVKLKPLAPQT
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
35.5
Major BPS
57.2
0.18
1.3
68.1
38
Major PPT
58.3
0.19
1
48.8
38.9
Minor 5ss
39
-1.2
3.4
56.7
47.6
Minor BPS
48.9
-0.1
2.1
59.8
45.1

Associated Gene:

Gene:
ACOT11
Ensembl Gene ID:
ENSAPLG00000003835
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037368
26808142 - 26819098
10957
ENSAPLT00000031282
26810225 - 26818329
8105
ENSAPLT00000003923
26808142 - 26818329
10188
ENSAPLT00000041256
26808142 - 26819098
10957