About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26816418_26816536_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26816418 - 26816536
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GCCCCCTGCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
TGTGCCTCACCC
Flanking Amino Acid:
KAIVNNAFKNSMEVGVCAEA
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.2
34.2
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
61.7
0.26
0.9
52.7
36.7
Minor 5ss
27.1
-2.6
3.2
35
41.6
Minor BPS
52.2
0.05
2
67.35
44.1

Associated Gene:

Gene:
ACOT11
Ensembl Gene ID:
ENSAPLG00000003835
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037368
26808142 - 26819098
10957
ENSAPLT00000031282
26810225 - 26818329
8105
ENSAPLT00000003923
26808142 - 26818329
10188
ENSAPLT00000041256
26808142 - 26819098
10957