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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26817306_26817377_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26817306 - 26817377
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAGC
5'SS Class:
major
3'SS Sequence:
TGCCCTGCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
CAGCCCCTGACT
Flanking Amino Acid:
LSVPWDQSNKVYLSYNNVSA
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69
38.8
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
67.3
0.39
0.9
60.9
35.1
Minor 5ss
31.2
-2.1
3.4
42.5
44.6
Minor BPS
51.8
0.14
1.7
66.54
43.9

Associated Gene:

Gene:
ACOT11
Ensembl Gene ID:
ENSAPLG00000003835
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041256
26808142 - 26819098
10957
ENSAPLT00000037368
26808142 - 26819098
10957
ENSAPLT00000031282
26810225 - 26818329
8105
ENSAPLT00000003923
26808142 - 26818329
10188