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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26817462_26817549_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26817462 - 26817549
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGGCC
5'SS Class:
major
3'SS Sequence:
CTGCACCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTGCAC
U12 Branch Point Sequence:
CTGCCCTGCACC
Flanking Amino Acid:
NWALAREKEKVRIYTLEEDK
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.2
60.6
40.1
Major BPS
46.1
-0.2
1.4
54.6
40.8
Major PPT
64.9
0.33
0.9
54.5
36.2
Minor 5ss
35
-1.7
3.7
51
45.8
Minor BPS
48.8
-0.1
2
60.56
44.4

Associated Gene:

Gene:
ACOT11
Ensembl Gene ID:
ENSAPLG00000003835
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003923
26808142 - 26818329
10188
ENSAPLT00000041256
26808142 - 26819098
10957
ENSAPLT00000037368
26808142 - 26819098
10957
ENSAPLT00000031282
26810225 - 26818329
8105