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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26818102_26818173_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26818102 - 26818173
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
CCGCACCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTAAAT
U12 Branch Point Sequence:
CGACCCTAAATC
Flanking Amino Acid:
VWPEGEETSKVAYYNQATPG
Intron Amino Acid Position:
571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
57.4
0.18
1.1
64.9
37.3
Major PPT
61.9
0.27
0.9
53.9
30.6
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
51.2
0.02
1.7
57.35
41.4

Associated Gene:

Gene:
ACOT11
Ensembl Gene ID:
ENSAPLG00000003835
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031282
26810225 - 26818329
8105
ENSAPLT00000003923
26808142 - 26818329
10188
ENSAPLT00000041256
26808142 - 26819098
10957
ENSAPLT00000037368
26808142 - 26819098
10957