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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26820174_26820401_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
26820174 - 26820401
Intron Length:
228

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCCAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TGGGGCAGGCCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGAACAC
U12 Branch Point Sequence:
CCGCGCTGAACA
Flanking Amino Acid:
TTQVAVPCFYSCDIAAEMHR
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1.1
57.7
46.7
Major BPS
48.4
-0.1
1.2
55.1
40.5
Major PPT
48.1
-0.1
1.2
36.1
44.9
Minor 5ss
28.3
-2.5
3.8
38.7
46.4
Minor BPS
46.7
-0.2
1.9
53.23
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027947
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025424
26819995 - 26820636
642