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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26822500_26825421_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26822500 - 26825421
Intron Length:
2922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTCAG
5'SS Class:
major
3'SS Sequence:
CAAATTTCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
CCCTCCCAAATT
Flanking Amino Acid:
QKETLLAAIKLYFEDEERAE
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
64.9
42.8
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
73.6
0.53
0.9
69.9
40.8
Minor 5ss
26.7
-2.7
2.9
30.9
43.2
Minor BPS
47.9
-0
2
63.6
47.2

Associated Gene:

Gene:
TTC4
Ensembl Gene ID:
ENSAPLG00000003928
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040271
26821658 - 26828542
6885