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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26823429_26824606_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26823429 - 26824606
Intron Length:
1178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATGAT
U12 Branch Point Sequence:
ACTAAGATAACA
Flanking Amino Acid:
DFIEAFHENSRFIDHLTVMF
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
77.4
30.7
Major BPS
66.9
0.42
1.3
59.7
46.7
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
32.3
-2
3.2
41.6
45
Minor BPS
42.6
-0.5
2.3
56.62
42.1

Associated Gene:

Gene:
TTC4
Ensembl Gene ID:
ENSAPLG00000003928
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044681
26821658 - 26829389
7732
ENSAPLT00000020392
26821658 - 26828542
6885
ENSAPLT00000017337
26821658 - 26827957
6300
ENSAPLT00000004035
26821658 - 26829389
7732