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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26824822_26825421_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26824822 - 26825421
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTCAG
5'SS Class:
major
3'SS Sequence:
TCCTCCCCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATC
Flanking Amino Acid:
QKETLLAAIKERNIKLVLEP
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
64.9
42.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
66.4
0.37
0.8
59.7
31.3
Minor 5ss
26.7
-2.7
2.9
30.9
43.2
Minor BPS
75.9
0.79
1
78.34
30.9

Associated Gene:

Gene:
TTC4
Ensembl Gene ID:
ENSAPLG00000003928
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004035
26821658 - 26829389
7732
ENSAPLT00000044681
26821658 - 26829389
7732
ENSAPLT00000020392
26821658 - 26828542
6885
ENSAPLT00000017337
26821658 - 26827957
6300